Pairwise homoplasy index phi test
WebSep 15, 2024 · The distance between any two terminals is then 2. The ancestor X might plausibly be assigned frequency 1/3 for each observed allele. In that case the distance between X and any terminal is 4/3, the patristic difference between any two terminals is 8/3, and the corresponding pairwise homoplasy is 2/3. That implies that there is … WebMar 18, 2000 · Pairwise homoplasy index (Phi) test for global recombination embedded in Splitstree also assesses the probability that recombination occurs by comparing observed …
Pairwise homoplasy index phi test
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WebDownload scientific diagram Results of the pairwise homoplasy index (PHI) test of closely related species using both LogDet transformation and splits decomposition. PHI test … WebMay 6, 2024 · New species and their most closely related species were analyzed using the Genealogical concordance phylogenetic species recognition (GCPSR) model. A pairwise …
WebApr 1, 2006 · The term “pairwise homoplasy index” refers to the fact that the refined incompatibility score can be interpreted as the minimum number of convergent or recurrent mutations (homoplasies) necessarily present on any tree describing the history of any two … WebPage topic: "Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa - Oxford Academic". Created by: Leroy Patterson. Language: english.
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WebJan 1, 2005 · Recombination tests based on the pairwise homoplasy index (PHI, Bruen, et al. 2006), Max χ 2 (Maynard Smith and Smith 1992), and neighbor similarity score (NSS, …
WebOct 22, 2014 · START was also used to determine that the GC content in the MLST genes was comparable to that of the whole-genome GC content. To detect recombination within the Y. enterocolitica MLST data, SplitsTree 4.2 was used to compute the pairwise homoplasy index (PHI). pumpkin disney carving patternsWebDownload scientific diagram The results of pairwise homoplasy index (PHI) test of closely related species using both LogDet transformation and splits decomposition. PHI test … sec georgetown scWebAcademia.edu is a platform for academics to share research papers. sec ghg reporting requirementWebOct 6, 2024 · The sequence alignment had a length of 816 nucleotides after excluding the stop codons. The potential recombination events were examined using the Phi test (Pairwise homoplasy index) implemented in SplitsTree (Huson 1998) and also identified using the Recombination Detection Program (RDP) 4.101 (Martin et al. 2015). sec geography syllabusWebPHI test and other tests of recombination. The PhiPack software package implements a few tests for recombination and can produce refined incompatibility matrices as well. Specifically, PHIPack implements the 'Pairwise Homoplasy Index', Maximum Chi2 and the 'Neighbour Similarity Score'. The program Phi can be run to produce a p-value of ... pumpkin dip with ginger snap cookiesWebThe Hepatica section Angulosa consists of mainly tetraploid (2 n = 28) species that are distributed disjunctly throughout Eurasia. Karyological evidence proves the hybrid origin of the polyploid species of this section. Hepatica transsilvanica is … sec gift giving entertaining on wall streetWebThe PHI recombination test of all the SuHV-1 strains showed (Table 1) statistically significant recombination within the dataset (p = <0.001). ... View in full-text Context 7 pumpkin dinner rolls bread machine